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Selected Publications

List of All Publications

2015

de los Santos, Emmanuel L. C. and Meyerowitz, Joseph T. and Mayo, Stephen L. et al. (2015) Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor. (Submitted)

2014

Wannier, Timothy M. and Mayo, Stephen L. (2014) The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions. Protein Science, 23 (8). pp. 1148-1153. ISSN 0961-8368. PMCID PMC4116662.

2013

Blomberg, Rebecca and Kries, Hajo and Pinkas, Daniel M. et al. (2013) Precision is essential for efficient catalysis in an evolved Kemp eliminase. Nature, 503 (7476). pp. 418-421. ISSN 0028-0836.

Jaru-Ampornpan, Peera and Liang, Fu-Cheng and Nisthal, Alex et al. (2013) Mechanism of an ATP-independent Protein Disaggregase. II. Distinct Molecular Interactions Drive Multiple Steps During Aggregate Disassembly. Journal of Biological Chemistry, 288 (19). pp. 13431-13445. ISSN 0021-9258.

Chitsaz, Mohsen and Mayo, Stephen L. (2013) GRID: A high-resolution protein structure refinement algorithm. Journal of Computational Chemistry, 34 (6). pp. 445-450. ISSN 0192-8651.

2012

Moore, Matthew M. and Oteng-Pabi, Samuel K. and Pandelieva, Antonia T. et al. (2012) Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design. PLoS ONE, 7 (12). Art. No. e52463 . ISSN 1932-6203.

Chen, Mike M. Y. and Snow, Christopher D. and Vizcarra, Christina L. et al. (2012) Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes. Protein Engineering, Design and Selection, 25 (4). pp. 171-178. ISSN 1741-0126.

Privett, Heidi K. and Kiss, Gert and Lee, Toni M. et al. (2012) Iterative approach to computational enzyme design. Proceedings of the National Academy of Sciences of the United States of America, 109 (10). pp. 3790-3795. ISSN 0027-8424.

2011

Lee, Toni M. and Farrow, Mary F. and Arnold, Frances H. et al. (2011) A structural study of Hypocrea jecorina Cel5A. Protein Science, 20 (11). pp. 1935-1940. ISSN 0961-8368. 

Keeffe, Jennifer R. and Gnanapragasam, Priyanthi N. P. and Gillespie, Sarah K. et al. (2011) Designed oligomers of cyanovirin-N show enhanced HIV neutralization. Proceedings of the National Academy of Sciences of the United States of America, 108 (34). pp. 14079-14084. ISSN 0027-8424. 

Zhang, Xin and Lam, Vinh Q. and Mou, Yun et al. (2011) Direct visualization reveals dynamics of a transient intermediate during protein assembly. Proceedings of the National Academy of Sciences of the United States of America, 108 (16). pp. 6450-6455. ISSN 0027-8424. 

Hemmert, Andrew C. and Otto, Tamara C. and Chica, Roberto A. et al. (2011) Nerve Agent Hydrolysis Activity Designed into a Human Drug Metabolism Enzyme. PLoS ONE, 6 (3). Art. No. e17441. ISSN 1932-6203. 

2010

Chica, Roberto A. and Moore, Matthew M. and Allen, Benjamin D. et al. (2010) Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries. Proceedings of the National Academy of Sciences of the United States of America, 107 (47). pp. 20257-20262. ISSN 0027-8424. 

Allen, Benjamin D. and Nisthal, Alex and Mayo, Stephen L. (2010) Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles. Proceedings of the National Academy of Sciences of the United States of America, 107 (46). pp. 19838-19843. ISSN 0027-8424. 

Allen, Benjamin D. and Mayo, Stephen L. (2010) An efficient algorithm for multistate protein design based on FASTER. Journal of Computational Chemistry, 31 (5). pp. 904-916. ISSN 0192-8651.